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Table 3 Comparison of PSSM with \(C_\alpha \)-match and CPSARST

From: An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data

PDB/SCOP entries

PSSM

\(C_\alpha \)-match

CPSARST

id1(size)–id2(size)

Aligned

RMSD (Å)

Aligned

RMSD (Å)

Aligned

RMSD (Å)

1nls (237)–2bqpA (228)

228

1.4

214

1.3

218

1.4

1glh (214)–1cpn (208)

208

0.7

206

0.5

206

0.5

1yadA (190)–2duaA (283)

190

2.6

130

1.7

151

2.4

1zbdA (177)–1pujA (261)

177

3.2

113

1.5

130

3.2

d1nkla (78)–d1qdma1 (77)

 77

2.6

 49

1.4

 70

2.4

  1. “Aligned” means how many residues were aligned
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Algorithms for Molecular Biology

ISSN: 1748-7188