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Table 3 Comparison of PSSM with \(C_\alpha \)-match and CPSARST

From: An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data

PDB/SCOP entries PSSM \(C_\alpha \)-match CPSARST
id1(size)–id2(size) Aligned RMSD (Å) Aligned RMSD (Å) Aligned RMSD (Å)
1nls (237)–2bqpA (228) 228 1.4 214 1.3 218 1.4
1glh (214)–1cpn (208) 208 0.7 206 0.5 206 0.5
1yadA (190)–2duaA (283) 190 2.6 130 1.7 151 2.4
1zbdA (177)–1pujA (261) 177 3.2 113 1.5 130 3.2
d1nkla (78)–d1qdma1 (77)  77 2.6  49 1.4  70 2.4
  1. “Aligned” means how many residues were aligned