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Table 4 Comparison of PSSM with CCP4 and SuperPose

From: An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data

PDB/SCOP entries PSSM CCP4 SuperPose
id1(size)–id2(size) Aligned RMSD (Å) Aligned RMSD (Å) Aligned RMSD (Å)
1nls_ (237)–2bqpA (228) 228 1.4 114 1.0 205 18.1
1glh_ (214)–1cpn_ (208) 208 0.7 156 0.4 156 0.4
1yadA (190)–2duaA (283) 190 2.6 157 2.4 183 10.6
1zbdA (177)–1pujA (261) 177 3.2  97 2.0 177 20.0
  1. “Aligned” means how many residues were aligned