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Table 4 Comparison of PSSM with CCP4 and SuperPose

From: An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data

PDB/SCOP entries

PSSM

CCP4

SuperPose

id1(size)–id2(size)

Aligned

RMSD (Å)

Aligned

RMSD (Å)

Aligned

RMSD (Å)

1nls_ (237)–2bqpA (228)

228

1.4

114

1.0

205

18.1

1glh_ (214)–1cpn_ (208)

208

0.7

156

0.4

156

0.4

1yadA (190)–2duaA (283)

190

2.6

157

2.4

183

10.6

1zbdA (177)–1pujA (261)

177

3.2

 97

2.0

177

20.0

  1. “Aligned” means how many residues were aligned
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Algorithms for Molecular Biology

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