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Table 9 Comparison of PSSM with MUSTANG using the Globins and Serine Proteinases data sets

From: An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data

Data sets

PDB codes

PSSM

MUSTANG

RMSD (Å) 

Aligned

RMSD (Ã…)

Aligned

Globins (5)

1hhoa, 2dhba, 1hhob, 2dhbb, 1mbd

1.37

141

1.41

139

Serine Proteinases (7)

3est, 2pka, 1ton, 3rp2, 4ptp, 5cha, 1ppb

1.72

223

1.56

205

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Algorithms for Molecular Biology

ISSN: 1748-7188