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Table 1 Inferred human gut Firmicutes CsoR meta-regulon

From: A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data

eggNOG / COG eggNOG 4.0 annotation Domains Mapped operons Operons for analysis P(R|D) Operon with COG1937 Operon with COG2217 Dual sites
COG1937 Transcriptional repressor IPR003735 530 332 1 332 94 93/221
COG2217 p-type ATPase IPR006121, IPR023214, IPR008250 1580 422 1 84 422 94/204
NOG218972 Heavy-metal-associated domain IPR006121 16 7 1 1 2 3/7
NOG72602 Predicted membrane protein IPR018758 16 5 1 0 0 1/4
NOG109008 N/A IPR018242 18 5 1 0 0 0/5
COG2836 Membrane protein IPR006121, IPR003834, IPR018758 36 8 1 0 1 1/3
NOG81268 Heavy-metal-associated domain IPR006121 34 6 1 0 1 1/5
  1. Operons for analysis denotes the total number of operons mapping to each eggNOG/COG after sensitivity adjustment. P(R|D) designates the posterior probability of regulation for the eggNOG/COG. The Operon with COG1937 and Operon with COG2217 columns indicate the number of genes mapping to an eggNOG/COG that were assigned to an operon containing also COG1937 or COG2217, respectively. Dual sites denotes the number of sequences mapping to an eggNOG/COG harboring two high-confidence sites, out of the total number of sequences mapping to that eggNOG/COG with high-confidence sites