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Table 2 Comparison on the real datasets for RSMT on cervical cancer samples

From: Analysis of gene copy number changes in tumor phylogenetics

Case #

RSMT tree weight (# Steiner nodes)

FISHtree

MSTtree

MPTtree

EXACTtree

C5

195 (13)

196 (12)

194 (13)

194 (13)

C6

82 (2)

82 (2)

81 (5)

81 (4)

C8

103 (6)

103 (6)

100 (9)

100 (8)

C9

143 (1)

142 (2)

142 (5)

142 (2)

C10

87 (0)

86 (1)

86 (1)

86 (1)

C12

72 (1)

71 (2)

71 (2)

71 (2)

C13

150 (5)

150 (5)

149 (7)

149 (7)

C15

74 (1)

73 (2)

73 (2)

73 (2)

C18

127 (4)

127 (4)

126 (6)

126 (6)

C21

73 (4)

74 (3)

73 (5)

73 (4)

C27

59 (1)

57 (3)

57 (2)

57 (3)

C29

83 (2)

82 (3)

81 (3)

81 (3)

C30

118 (9)

118 (9)

116 (9)

116 (10)

C32

209 (7)

207 (9)

205 (14)

205 (13)

C34

83 (5)

82 (6)

82 (6)

82 (6)

C35

67 (1)

67 (1)

66 (2)

66 (3)

C42

199 (7)

198 (9)

197 (12)

197 (11)

C45

172 (10)

169 (13)

169 (14)

169 (15)

C46

110 (5)

109 (6)

108 (8)

108 (7)

C49

162 (4)

161 (5)

161 (7)

161 (7)

C53

80 (3)

79 (4)

79 (4)

79 (4)

C54

146 (6)

145 (7)

144 (10)

144 (9)

  1. The best tree weights are shown in italics for each sample. The number of Steiner nodes is shown in parenthesis. 24 cervical cancer samples have ties in tree weights and thus are not included due to the space limit