Table 3 Computational time (in seconds) required in comparing two protein structures using different methods
From: An efficient algorithm for protein structure comparison using elastic shape analysis
Method | ~100 residues | ~200 residues | ~300 residues |
|---|---|---|---|
Matt | 1.300 | 3.000 | 5.100 |
MUSTANG | 0.160 | 2.300 | 2.100 |
ESA | 1.200 | 2.600 | 15.000 |
Proposed method (ESA-MC-BB) | 0.740 | 1.040 | 1.540 |
Proposed method (ESA-CA) | 0.556 | 0.745 | 1.466 |