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Fig. 9 | Algorithms for Molecular Biology

Fig. 9

From: Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Fig. 9

The performance of the Branching Measure, Rsem-Eval, and TransRate on identifying chimeric transcripts on the four datasets described in “Global assembly” section. BM-x stands for Branching Measure using a window of size x. In this test, the 10% leftmost and rightmost parts of the transcripts were disregarded in the Branching Measure calculation. a Simulated dataset with 5% pre-mRNA. b Simulated dataset with 15% pre-mRNA. c GEUVADIS dataset. d SKNSH dataset

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Algorithms for Molecular Biology

ISSN: 1748-7188