Skip to main content

Advertisement

Table 4 Detailed running times (in format mm:ss) and maximal main memory and disk space consumption (in GB) for the G. gallus instance

From: Gerbil: a fast and memory-efficient k-mer counter with GPU-support

  k System one System two
Gerbil gGerbil KMC DSK Gerbil gGerbil KMC DSK
Phase 1 28 10:04 10:03 10:51 10:22 09:49 09:49 09:52 09:30
Phase 2 28 10:26 06:20 04:46 16:00 06:25 03:01 03:16 11:01
Main memory 28 2.14 2.14 14.28 15.28 2.21 1.79 26.99 16.69
Disk space 28 23.66 23.66 24.86 37.30 23.66 23.66 24.86 37.30
Phase 1 56 10:01 10:06 10:40 10:26 09:49 09:49 09:47 09:30
Phase 2 56 08:56 05:25 09:08 13:13 05:27 03:05 06:59 10:00
Main memory 56 3.97 4.59 14.29 15.00 4.01 3.41 26.98 14.78
Disk space 56 16.25 16.25 17.02 57.20 16.25 16.25 17.02 57.20
  1. Each entry is the average of three runs