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Table 9 Running time in seconds for each method

From: Aligning coding sequences with frameshift extension penalties

Gene family

fse0

fse

macse_p

needlenuc

needleprot

I

299

291

53

97

22

II

270

260

45

93

20

III

377

389

54

62

20

  1. For each method and gene families I, II, and III, the running time was calculated on the same computer (24 processors of 2.1GHz each and 10GB of RAM) with the parameters fs_open_cost = \(-20\) and fs_extend_cost = \(-0.2\)
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Algorithms for Molecular Biology

ISSN: 1748-7188