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Table 9 Running time in seconds for each method

From: Aligning coding sequences with frameshift extension penalties

Gene family fse0 fse macse_p needlenuc needleprot
I 299 291 53 97 22
II 270 260 45 93 20
III 377 389 54 62 20
  1. For each method and gene families I, II, and III, the running time was calculated on the same computer (24 processors of 2.1GHz each and 10GB of RAM) with the parameters fs_open_cost = \(-20\) and fs_extend_cost = \(-0.2\)
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Algorithms for Molecular Biology

ISSN: 1748-7188