From: Aligning coding sequences with frameshift extension penalties

fs_open_cost | Method | ((G1,G3),G2) | ((G1,G2),G3) |
---|---|---|---|

−10 | fse (-1) | X | |

fse (-0.5) | X | ||

fse (-0.2) | X | ||

fse0 | X | ||

macse_p | X | ||

−20 | fse (-1) | X | |

fse (-0.5) | X | ||

fse (-0.2) | X | ||

fse0 | X | ||

macse_p | X | ||

−30 | fse (-1) | X | |

fse (-0.5) | X | ||

fse (-0.2) | X | ||

fse0 | X | ||

macse_p | X | ||

needlenuc | X | ||

needleprot | X |