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Table 8 Similarity relationships between the groups G1, G2 and G3 for the five methods

From: Aligning coding sequences with frameshift extension penalties

fs_open_cost Method ((G1,G3),G2) ((G1,G2),G3)
−10 fse (-1)   X
fse (-0.5)   X
fse (-0.2) X  
fse0 X  
macse_p X  
−20 fse (-1)   X
fse (-0.5)   X
fse (-0.2)   X
fse0 X  
macse_p X  
−30 fse (-1)   X
fse (-0.5)   X
fse (-0.2)   X
fse0   X
macse_p X  
needlenuc X  
needleprot   X
  1. Similarity relationships between the splicing orthology groups G1, G2 and G3 computed using the similarity matrices of the five methods for the 21-CDS dataset