Table 8 Similarity relationships between the groups G1, G2 and G3 for the five methods
From: Aligning coding sequences with frameshift extension penalties
fs_open_cost | Method | ((G1,G3),G2) | ((G1,G2),G3) |
|---|---|---|---|
−10 | fse (-1) | X | |
fse (-0.5) | X | ||
fse (-0.2) | X | ||
fse0 | X | ||
macse_p | X | ||
−20 | fse (-1) | X | |
fse (-0.5) | X | ||
fse (-0.2) | X | ||
fse0 | X | ||
macse_p | X | ||
−30 | fse (-1) | X | |
fse (-0.5) | X | ||
fse (-0.2) | X | ||
fse0 | X | ||
macse_p | X | ||
needlenuc | X | ||
needleprot | X |