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Fig. 3 | Algorithms for Molecular Biology

Fig. 3

From: StreAM-\(T_g\): algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs

Fig. 3

Structural representation of TC-Aptamer. a Crystal structure of TC-Aptamer with a cut-off of 13 Å and using \(C3'\) atom for coarse graining reveals edges for dominant WC base-pairings. Important structural parts are annotated according to [23]. b Secondary structure representation of TC-Aptamer. Nucleotides are displayed as vertices and connections are based on hydrogen-bonding patterns. Nucleotides participating in TC-binding are colored in red. Graphics were created using Pymol and R [39, 47]

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