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Table 1 Details of the dynamic graphs obtained from MD simulation trajectories

From: StreAM-\(T_g\): algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs

 

\(\mathbf{10}\) Å

\(\mathbf{11}\) Å

\(\mathbf{12}\) Å

\(\mathbf{13}\) Å

\(\mathbf{14}\) Å

\(\mathbf{15}\) Å

Rand \(_{g1}\)

Rand \(_{g2}\)

Rand \(_{g3}\)

|V|

65

65

65

65

65

65

500

500

500

|E|

94

129

189

241

298

353

500

1000

1200

\(\delta _{avg}\)

6.1

15.6

19.4

18

19.6

23.8

80

100

120

  1. |V| is the number of vertices, |E| the number of edges and \(\delta _{t}\) is the average batch size of a simulation. We convert simulations to unit sphere dynamic graphs with \(d \in [10, 15]\) Å
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Algorithms for Molecular Biology

ISSN: 1748-7188