Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements

Table 1 The rearranged pairs with average overlap size \(\bar{\ell }>10\) nt and their rearrangement type as specified in the literature

Species	Accessions	\(\bar{\ell }\)	Literature Type	References
Maulisia mauli Normichthys operosus	NC_011007NC_011009	127	TDRL	[10]
Phaeognathus hubrichti Hydromantes brunus	NC_006344NC_006345	66	no duplication TDRL	[38, 39]
Galaxias maculatus Galaxiella nigrostriata	NC_004594NC_008448	62	duplication deletion	[10]
Jordanella floridae Xenotoca eiseni	NC_011387NC_011381	59	duplication deletion	[40]
Olisthops cyanomelas Chlorurus sordidus	NC_009061NC_006355	27	duplication	[41]
Parachanna insignis Odontobutis platycephala	NC_022480NC_010199	25	TDRL	[42]
Platax orbicularis Luvarus imperialis	NC_013136NC_009851	20	annotation error trnY	[43]
Ischikauia steenackeri Chanodichthys mongolicus	NC_008667NC_008683	20	annotation error trnI	[44]
Albula glossodonta Pterothrissus gissu	NC_005800NC_005796	20	TDRL	[45]
Galago senegalensis Otolemur crassicaudatus	NC_012761NC_012762	19	annotation error trnI	[46]
Batrachoseps wrighti Batrachoseps attenuatus	NC_006333NC_006340	19	duplication deletion	[39]
Diplophos taenia Chauliodus sloani	NC_002647NC_003159	19	TDRL	[47]
Chlorurus sordidus Xenotoca eiseni	NC_006355NC_011381	18	duplication deletion	[41]
Chauliodus sloani Myctophum affine	NC_003159NC_003163	10	duplication deletion	[48]

ISSN: 1748-7188