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Table 3 Running time and average SPS with RNA MSA

From: HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing

 

Φ RNA (small)

Φ RNA (large)

Time

Memory (GB)

Avg SPS

Time

Memory (GB)

Avg SPS

MUSCLE

1 h 25 m

~ 13

0.821

–

–

–

MAFFT

45 m 33 s

~ 10

0.815

–

–

–

Clustal-Omega

4 h 16 m

~ 10

0.835

–

–

–

HAlign

1 h 32 s

~ 2

0.631

3 h 15 m

~ 10

0.631

HAlign-II

23 m 34 s

~ 1

0.633

59 m 42 s

~ 2

0.633

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Algorithms for Molecular Biology

ISSN: 1748-7188