Table 4 Running time and average SPS with protein MSA
|  | Φ Protein (1 ×) | Φ Protein (100 ×) | Φ Protein (1000 ×) | ||||||
|---|---|---|---|---|---|---|---|---|---|
Time | Memory (MB) | Avg SPS | Time | Memory (GB) | Avg SPS | Time | Memory (GB) | Avg SPS | |
MUSCLE | 3 m 13 s | ~ 300 | 0.892 | ~ 34 h | ~ 10 | 0.892 | – | – | – |
MAFFT | 5Â m 53Â s | ~Â 100 | 0.878 | 37Â m 51Â s | ~Â 5 | 0.878 | 7Â h 22Â m | ~Â 30 | 0.878 |
Clustal-Omega | 54 m 08 s | ~ 100 | 0.912 | 28 h 15 m | ~ 5 | 0.912 | – | – | – |
SparkSW | 3Â m 23Â s | ~Â 100 | 0.716 | 1Â h 12Â m | ~Â 2 | 0.716 | 5Â h 30Â m | ~Â 18 | 0.716 |
HAlign-II | 1Â m 45Â s | ~Â 100 | 0.695 | 26Â m 36Â s | ~Â 1 | 0.695 | 2Â h 52Â m | ~Â 10 | 0.695 |