Skip to main content

Advertisement

Table 1 Distance values calculated with our algorithm for a pair of simulated sequences of length \(L=500\) kb with a match rate of \(p=0.5\), corresponding to a distance of 0.824 substitutions per position

From: Phylogeny reconstruction based on the length distribution of k-mismatch common substrings

  k = 30 k = 50 k = 70 k = 90 k = 120 k = 150 k = 200
w = 1 0.665 0.809 0.935 0.897 0.794 0.781 0.995
w = 5 0.839 0.835 0.784 0.783 0.773 0.880
w = 11 0.869 0.808 0.788 0.781 0.863
w = 21 0.813 0.824 0.824 0.804 0.817
w = 31 0.813 0.824 0.824 0.829 0.835
w = 51 0.824 0.819 0.820
  1. Dashes indicate that no distance value could be calculated since our algorithm could not find the second local maximum in the smoothed length distribution of the k-mismatch common substrings