Table 2 Comparison with different coverages (CELSIM instance)
From: A fast and accurate enumeration-based algorithm for haplotyping a triploid individual
c | RR | VE | MEC | Running time (s) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
EH | HC | HT | EH | HC | HT | EH | HC | HT | EH | HC | HT | |
2 | 0.94 | 0.89 | 0.86 | 10 | 30 | 29 | 16 | 40 | 19 | 0.01 | 0.01 | 0.01 |
3 | 0.95 | 0.89 | 0.85 | 9 | 31 | 28 | 25 | 60 | 30 | 0.01 | 0.02 | 0.01 |
4 | 0.95 | 0.89 | 0.91 | 7 | 31 | 28 | 34 | 79 | 38 | 0.01 | 0.02 | 0.01 |
5 | 0.96 | 0.89 | 0.87 | 6 | 30 | 26 | 41 | 96 | 46 | 0.01 | 0.02 | 0.01 |
6 | 0.96 | 0.89 | 0.87 | 5 | 30 | 25 | 52 | 120 | 58 | 0.01 | 0.02 | 0.01 |
7 | 0.96 | 0.90 | 0.89 | 5 | 29 | 26 | 58 | 133 | 65 | 0.01 | 0.02 | 0.01 |
8 | 0.96 | 0.89 | 0.89 | 5 | 30 | 25 | 67 | 157 | 75 | 0.01 | 0.02 | 0.01 |
9 | 0.96 | 0.89 | 0.89 | 4 | 30 | 25 | 75 | 175 | 84 | 0.01 | 0.03 | 0.01 |
10 | 0.97 | 0.90 | 0.89 | 4 | 29 | 26 | 85 | 194 | 117 | 0.01 | 0.03 | 0.01 |