Skip to main content

Advertisement

Table 7 Comparison with different haplotype lengths (MetaSim instance)

From: A fast and accurate enumeration-based algorithm for haplotyping a triploid individual

n RR VE MEC Running time (s)
EH HC HT EH HC HT EH HC HT EH HC HT
100 0.95 0.90 0.88 7 30 26 299 513 343 0.02 0.04 0.02
200 0.93 0.89 0.90 17 62 57 550 985 620 0.24 0.31 0.21
300 0.93 0.89 0.89 25 93 79 788 1441 896 0.56 0.63 0.60
500 0.93 0.88 0.89 45 156 142 1284 2392 1440 2.43 2.83 2.64
800 0.92 0.88 0.89 75 254 238 1998 3791 2254 9.65 10.50 9.89
1000 0.92 0.88 0.88 91 319 305 2484 4731 2804 17.43 17.95 17.47