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Table 1 Overview of the total number of sites of all alignments per alignment method and the number of derived splids with length \(\ge\) 2 bp for the ENCODE data set containing only alignments with sequence information for all taxa

From: Split-inducing indels in phylogenomic analysis

Program Number of sites Number of splids
ClustalW 79,006 793
Dialign-TX 96,990 2163
Mafft 84,105 1021
Mafft L-INS-i 83,578 1245
Mafft G-INS-i 83,123 1279
Muscle 84,577 1378
ProbConsRNA 86,277 1927
Prank 96,622 2047
T-Coffee 84,835 1831
TBA/Multiz 90,726 2032