Skip to main content
Search
Explore journals
Get published
About BMC
My account
Search all BMC articles
Search
Algorithms for Molecular Biology
Home
About
Articles
Submission Guidelines
Table 3 Results for the large ENCODE data set.
Splids
\(\ge\)
2 bp were coded and trees were calculated with
RAxML
using the Gamma model for binary data and ascertainment bias correction
From:
Split-inducing indels in phylogenomic analysis
Mafft G-INS-i
T-Coffee
TBA/Multiz
Number of sites
36,132,992
36,450,667
37,689,662
Number of
splids
545,790
922,277
919,908
\(d_{RF}\)
16
16
12
\(d'_{RF}\)
0.2424
0.2424
0.1818
\(d_{Q}\)
5000
7494
3710
\(d'_{Q}\)
0.0849
0.1272
0.0630
Back to article page