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Fig. 1 | Algorithms for Molecular Biology

Fig. 1

From: Improved de novo peptide sequencing using LC retention time information

Fig. 1

Retention time prediction for string \(\mathtt {S}=\mathtt {AIAGAK}\). a In the linear model, the retention time of a string is the sum of its character’s coefficients. b In the position-dependent model (with \(\gamma = 2\)), the position of the first and the last two characters is considered additionally. c The neighborhood-based model considers all pairs of consecutive characters in a string. The first and the last character have additional coefficients, as they only have one adjacent character

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