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Fig. 3 | Algorithms for Molecular Biology

Fig. 3

From: Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

Fig. 3

a Sequences enriched with a 7-mer motif (ACGTGAT) as indicated with red marks. Upper bars indicate sequence lengths, lower bars indicate SSPs for the motif. b Brownian bridge for the 7-mer motif in a (red) and for 500 random 7-mer motifs (gray). The RCP corresponding to the BB is indicated. c Random walk for the motif in a (red) and 500 random 7-mer motifs (black). The RCP corresponding to the RW is indicated. d Schematic of the MSR method. Lines represent sequences with lengths proportional to the probability of observing the motif one or more times. A motif occurrence is marked by an asterisk. The RCP corresponding to the motif distribution is indicated

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