Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

Table 1 Rank correlation p-values for URM (U) and seed target (S) motifs

miRNA	Seed target (S)	(SNU)\|(UNS)	UN*S	SN*U	Refs.
miR-7	2.6e−03	1.5e−13	2.4e−11	9.6e−05	[26]
miR-9	6.6e−09	1.5e−17	2.6e−19	1.2e−05	[26]
miR-16	1.8e−178	7.3e−147	5.7e−65	9.2e−76	[27]
MiR-106b	2.5e−99	9.7e−158	4.5e−145	1.8e−58	[27]
MiR-122a	3.2e−02	4.1e−05	7.6e−04	2.7e−02	[26]
MiR-128a	6.6e−19	2.2e−48	4.7e−33	8.2e−21	[26]
MiR-132	2.4e−08	3.7e−27	3.9e−33	1.2e−07	[26]
MiR-133a	5.1e−04	9.4e−09	5.7e−06	4.3e−03	[26]
MiR-142	2.4e−05	1.4e−13	1.0e−11	6.0e−05	[26]
MiR-148b	6.3e−09	1.9e−11	3.2e−12	3.4e−04	[26]
MiR-181a	7.9e−17	3.9e−53	2.4e−46	5.1e−18	[26]

p-values for RE motifs involving URM (U) and miRNA seed site targets (S) in different combinations for miRNA over-expression data sets. All p-values were calculated with the Brownian bridge method. N denotes any nucleotide

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