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Table 3 Sensitivity and precision of the ebwt2snp pipeline

From: SNPs detection by eBWT positional clustering

Cov SEN (%) PREC (%) TP FP FN Non-isol Non isol (%)
3 84.34 45.19 317,490 385,060 58,938 45,363 65.34
4 83.18 50.67 313,131 304,811 63,297 44,491 64.08
5 80.53 60.36 303,130 199,042 73,298 42,394 61.06
6 77.94 66.62 293,385 146,972 83,043 40,403 58.20
7 75.22 70.93 283,145 116,042 93,283 38,405 55.32
8 72.32 73.99 272,223 95,675 104,205 36,427 52.47
9 69.18 76.33 260,405 80,746 116,023 34,391 49.54
10 65.80 78.16 247,685 69,203 128,743 32,281 46.50
11 59.83 79.82 225,232 56,929 151,196 28,846 41.55
12 55.45 81.21 208,725 48,284 167,703 26,360 37.97
  1. Values are computed using as ground truth the SNPs predicted by a classic aligner-based pipeline
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Algorithms for Molecular Biology

ISSN: 1748-7188