Table 1 Normalized coherence scores of various marker subsets in human IMR90 cells
From: Semi-nonparametric modeling of topological domain formation from epigenetic data
Allowed modifications (human IMR90 to IMR90) | Coherence score |
|---|---|
(Normalized) | |
28 histone modifications + Concave + Nonnegative | 1.00 |
28 histone modifications + Concave | 0.99 |
28 histone modifications | 0.97 |
H3K4me3, H3K79me2, H3K27ac, H3K9me3, H3K36me3, H4K20me1 | 0.94 |
H3K36me3, H3K4me1, H3K4me3, H3K9me3 + Concave + Nonnegative | 0.94 |
H3K36me3, H3K4me1, H3K4me3, H3K9me3 + Concave | 0.93 |
H3K36me3, H3K4me1, H3K4me3, H3K9me3 | 0.92 |