Skip to main content

Table 5 Assembly statistics for simulated S. cerevisiae and C. elegans reads and simulated linkage maps

From: Kermit: linkage map guided long read assembly

Assembly

S. cerevisiae

C. elegans

Miniasm

Kermit

Miniasm

Kermit

# of contigs

26

22

291

261

Total length

11,831,837

(97.32%)

11,728,421

(96.47%)

102,040,817

(103.81%)

101,632,493

(103.40%)

N50

605,399

640,779

2,337,914

2,293,633

NGA50

565,122

585,849

2,070,983

2,337,914

Misassemblies

2

1

7

7

Back to article page

Algorithms for Molecular Biology

ISSN: 1748-7188