Table 6 Assembly statistics for real S. cerevisiae and C. elegans reads and simulated linkage maps
Assembly | S. cerevisiae | C. elegans | ||||
|---|---|---|---|---|---|---|
Miniasm | Kermit | Canu | Miniasm | Kermit | Canu | |
# of contigs | 31 | 29 | 34 | 177 | 188 | 159 |
Total length | 12,118,143 (99.68%) | 11,997,376 (98.69%) | 12,426,814 (102.22%) | 109,318,925 (111.22%) | 104,545,368 (106.36%) | 108,154,535 (110.03%) |
N50 | 732,688 | 763,111 | 739,529 | 2,270,602 | 1,928,805 | 3,202,659 |
NGA50 | 345,801 | 376,210 | 375,952 | 272,995 | 271,763 | 271,783 |
Misassemblies | 65 | 60 | 82 | 1837 | 1651 | 2019 |