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Fig. 2 | Algorithms for Molecular Biology

Fig. 2

From: Differentially mutated subnetworks discovery

Fig. 2

a Performance of DAMOKLE as a function of the differential coverage \(dc_{S}({\mathcal {C}},{\mathcal {D}})\) of subnetwork S. The figure shows (red) the fraction of times, out of 10 experiments, that the best solution corresponds to S and (blue) the fraction of genes in S that are reported in the best solution by DAMOKLE. For the latter, error bars show the standard deviation on the 10 experiments. \(n=100\) and \(k=5\) for all experiments. b Performance of DAMOKLE as a function of the number k of genes in subnetwork S. \(n=100\) and \(dc_{S}({\mathcal {C}},{\mathcal {D}})=0.46\) for all experiments. c Performance of DAMOKLE as a function of the number n of samples in \({\mathcal {C}},{\mathcal {D}}\). \(k=10\) and \(dc_{S}({\mathcal {C}},{\mathcal {D}})=0.46\) for all experiments

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