Table 1 The information we compute for our example, \(T = \mathtt{GATTACAT!GATACAT!GATTAGATA}\)
Rank | Mapped characters | Suffix | Sources | Frequency | Preceding partial sum |
|---|---|---|---|---|---|
0 | A | #GATTAC | 1 | 1 | 0 |
1 | T | !GATAC | 2 | 1 | 1 |
2 | T | !GATTAG | 3 | 1 | 2 |
3 | T | A$$ | 5 | 1 | 3 |
4 | T | ACAT! | 4 | 2 | 4 |
5 | T | AGATA$$ | 5 | 1 | 6 |
6 | C | AT! | 4 | 2 | 7 |
7 | G | ATA$$ | 5 | 1 | 9 |
8 | G | ATAC | 2 | 1 | 10 |
9 | G | ATTAC | 1 | 1 | 11 |
10 | G | ATTAG | 3 | 1 | 12 |
11 | A | CAT# | 4 | 2 | 13 |
12 | A | GATA$$ | 5 | 1 | 15 |
13 | ! | GATAC | 2 | 1 | 16 |
14 | $ | GATTAC | 1 | 1 | 17 |
15 | ! | GATTAG | 3 | 1 | 18 |
16 | A | T!GATAC | 2 | 1 | 19 |
17 | A | T!GATTAG | 3 | 1 | 20 |
18 | A | TA$$ | 5 | 1 | 21 |
19 | T, A | TAC | 1; 2 | 2 | 22 |
20 | T | TAG | 3 | 1 | 24 |
21 | A | TTAC | 1 | 1 | 25 |
22 | A | TTAG | 3 | 1 | 26 |