Table 1 The number of datasets on which methods failed is indicated below by model condition
From: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge
# of taxa | # of genes | ILS level | Sequence type | Method | # of failures (out of 20) |
|---|---|---|---|---|---|
100 | 25 | Very high | Exon | NJMerge(\({\mathcal {T}}_{true}\), \(D_{LD}\)) | 1 |
100 | 25 | Very high | Exon | NJMerge(\({\mathcal {T}}_{RAX}\), \(D_{AGID}\)) | 1 |
100 | 25 | Very high | Intron | NJMerge(\({\mathcal {T}}_{true}\),\( D_{AGID}\)) | 1 |
1000 | 1000 | Low/moderate | Exon | SVDquartets | 20 |
1000 | 1000 | Low/moderate | Exon | RAxML | 3 |
1000 | 1000 | Low/moderate | Intron | NJMerge(\({\mathcal {T}}_{AST}\), \(D_{LD}\)) | 1 |
1000 | 1000 | Low/moderate | Intron | SVDquartets | 20 |
1000 | 1000 | Low/moderate | Intron | RAxML | 20 |
1000 | 1000 | Very high | Exon | ASTRAL-III | 19 |
1000 | 1000 | Very high | Exon | NJMerge(\({\mathcal {T}}_{true}\), \(D_{LD}\)) | 1 |
1000 | 1000 | Very high | Exon | NJMerge(\({\mathcal {T}}_{AST}\), \(D_{LD}\)) | 1 |
1000 | 1000 | Very high | Exon | NJMerge(\({\mathcal {T}}_{SVD}\), \(D_{LD}\)) | 2 |
1000 | 1000 | Very high | Exon | NJMerge(\({\mathcal {T}}_{RAX}\), \(D_{LD}\)) | 2 |
1000 | 1000 | Very high | Exon | SVDquartets | 20 |
1000 | 1000 | Very high | Intron | ASTRAL-III | 4 |
1000 | 1000 | Very high | Intron | NJMerge(\({\mathcal {T}}_{SVD}, D_{LD}\)) | 1 |
1000 | 1000 | Very high | Intron | SVDquartets | 20 |
1000 | 1000 | Very high | Intron | RAxML | 19 |