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Fig. 3 | Algorithms for Molecular Biology

Fig. 3

From: TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column

Fig. 3

Convergence of optimized parameters. The upper left panel shows the distributions of the pairwise relative differences of inferred parameters. The x-axis represents the number of alignment columns used to train the parameters. The upper right panel represents the distribution of the correlation coefficients of tree edge lengths between the PhyloP model of the UCSC genome browser site and the inferred parameters. The x-axis is the same as that shown in the upper left panel. The bottom panel represents the distributions of inferred time to each concestor from the present. The unit is the number of substitutions per site. Each parameter set is trained using 100,000 alignment columns sampled from 4d sites

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