From: Kohdista: an efficient method to index and query possible Rmap alignments
Method | Time (s) | Memory (MB) | Align-ments | Recall | Precision |
---|---|---|---|---|---|
Kohdista | 20 | 19.0 | 907 | 702/4305 (16%) | 702/771 (91%) |
Kohdista (lax) | 373 | 18.3 | 8545 | 3925/4305 (91%) | 3925/8545 (46%) |
Valouev et al. | 148 | 4.0 | 742 | 699/4305 (16%) | 699/742 (94%) |
MalignerDP | 47 | 6.0 | 1959 | 1296/4305 (30%) | 1296/1959 (66%) |
OMBlast | 116 | 2078 | 1008 | 806/4305 (19%) | 806/1008 (80%) |
RefAligner | 31 | 81.2 | 992 | 958/4305 (22%) | 948/992 (97%) |
MalignerIX | 4 | 6.0 | 0 | 0/4305 (0%) | 0/0 (N/A) |
OPTIMA | 455 | 10756.5 | 0 | 0/4305 (0%) | 0/0 (N/A) |