Table 2 Performance on plum
From: Kohdista: an efficient method to index and query possible Rmap alignments
Method | Time (h) | Memory | Alignments |
|---|---|---|---|
Kohdista | 31 | 7.4 GB | 16,109,151 |
Valouev et al. | 678 | 60 MB | 6387 |
MalignerDP | 214 | 784 MB | 1,258,328 |
OMBlast | 151 | 12.3 GB | 424,730 |
RefAligner | 90 | 374 MB | 10,039 |