Dataset | Number of taxa | NHD | Gappiness | Ref align length | Est align length | SP-FN | SP-FP |
---|
IGIA | 110 | 0.606 | 0.915 | 10,368 | 6675 | 0.734 | 0.784 |
IGIB | 202 | 0.579 | 0.910 | 10,633 | 7379 | 0.825 | 0.864 |
IGIC2 | 32 | 0.533 | 0.700 | 4243 | 3514 | 0.689 | 0.715 |
IGID | 21 | 0.719 | 0.782 | 5061 | 3023 | 0.874 | 0.904 |
IGIE | 249 | 0.451 | 0.838 | 2751 | 2775 | 0.393 | 0.376 |
IGIIA | 174 | 0.668 | 0.814 | 6406 | 7005 | 0.816 | 0.800 |
PA23 | 142 | 0.293 | 0.267 | 3991 | 3552 | 0.078 | 0.077 |
PE23 | 117 | 0.300 | 0.612 | 9436 | 10,083 | 0.202 | 0.213 |
PM23 | 102 | 0.361 | 0.797 | 10,999 | 8803 | 0.262 | 0.288 |
SA16 | 132 | 0.212 | 0.205 | 1866 | 1673 | 0.031 | 0.028 |
SA23 | 144 | 0.304 | 0.460 | 4048 | 3678 | 0.077 | 0.081 |
- The empirical study made use of reference alignments (“Ref align”) from the CRW database [3]. The reference alignments were curated using heterogeneous data including secondary structure information. The column description is identical to Table 2, where the empirical study made use of reference alignments in lieu of the simulation study’s true alignments