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Fig. 3 | Algorithms for Molecular Biology

Fig. 3

From: Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains

Fig. 3

Evaluation of the agreement between the structure probabilistic and scoring models with the reference energies for a tRNA transcript. Each dot corresponds to a suboptimal structure of the tRNA. The structures are sorted according to reference free energy in the x-axis, computed by Vienna package RNAsubopt tool. The probabilities and scores are scaled to the energy dimension (Eq. 4). Annotated correlations of each panel are the Spearman’s correlation coefficients between the x and y axes. Each correlation corresponds to an individual entry within the corresponding distributions that are shown as violin plots in Fig. 2

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