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Table 1 Tools for xenograft sorting and read filtering with key properties

From: Fast lightweight accurate xenograft sorting

Tool Ref. Input Operations Language
XenofilteR [2] Aligned BAM Filter R
Xenosplit [3] Aligned BAM Filter, count Python
Bamcmp [4] Aligned BAM Partial sort C++
Disambiguate [5] Aligned BAM Partial sort Python or C++
BBsplit [6] Raw FASTQ Partial sort Java
Xenome [7] Raw FASTQ Count, sort C++
Xengsort (This) Raw FASTQ Count, sort Python + numba
  1. See text for definition of operations
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Algorithms for Molecular Biology

ISSN: 1748-7188

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