Table 1 Impact of varying the values of \(t_f\) and \(t_l\) on the assembly results for E. coli data
From: Fast and efficient Rmap assembly using the Bi-labelled de Bruijn graph
\(t_f\) | \(t_l\) | Run time(s) | Peak Memory(Mb) | No. of contigs | Max | Mean |
|---|---|---|---|---|---|---|
250 | 1500 | 179 | 305 | 4 | 272 (2.420 Mbp) | 267 (2.326 Mbp) |
250 | 2000 | 200 | 305 | 3 | 271 (2.418 Mbp) | 270 (2.351 Mbp) |
250 | 3000 | 232 | 305 | 3 | 271 (2.419 Mbp) | 267 (2.333 Mbp) |
500 | 1500 | 403 | 459 | 10 | 336 (3.072 Mbp) | 295 (2.625 Mbp) |
500 | 2000 | 445 | 459 | 23 | 529 (4.701 Mbp) | 371 (3.252 Mbp) |
500 | 3000 | 509 | 459 | 49 | 529 (4.711 Mbp) | 430 (3.793 Mbp) |
1,000 | 1500 | 476 | 628 | 33 | 531 (4.745 Mbp) | 427 (3.792 Mbp) |
1,000 | 2000 | 533 | 629 | 29 | 529 (4.746 Mbp) | 422 (4.746 Mbp) |
1,000 | 3000 | 629 | 630 | 35 | 530 (4.742 Mbp) | 412 (3.662 Mbp) |
1,500 | 1500 | 537 | 705 | 11 | 424 (3.732 Mbp) | 347 (3.028 Mbp) |
1,500 | 2000 | 616 | 709 | 28 | 533 (4.778 Mbp) | 424 (3.760 Mbp) |
1,500 | 3000 | 748 | 711 | 22 | 535 (4.764 Mbp) | 440 (3.887 Mbp) |