Table 1 The number of bins identified by the binning tools for each dataset
From: Improving metagenomic binning results with overlapped bins using assembly graphs
Dataset | Ground truth bins | Assembly type | Binning tool | Number of bins identified |
|---|---|---|---|---|
Sim-5G | 5 | metaSPAdes | CONCOCT | 7 |
MaxBin2 | 5 | |||
SolidBin | 5 | |||
SGA | CONCOCT | 11 | ||
MaxBin2 | 5 | |||
SolidBin | 5 | |||
Sim-10G | 10 | metaSPAdes | CONCOCT | 12 |
MaxBin2 | 10 | |||
SolidBin | 10 | |||
SGA | CONCOCT | 14 | ||
MaxBin2 | 9 | |||
SolidBin | 9 | |||
Sim-20G | 20 | metaSPAdes | CONCOCT | 22 |
MaxBin2 | 21 | |||
SolidBin | 20 | |||
SGA | CONCOCT | 28 | ||
MaxBin2 | 20 | |||
SolidBin | 19 | |||
Sharon-1 [39] | 12 | metaSPAdes | CONCOCT | 27 |
MaxBin2 | 5 | |||
SolidBin | 5 | |||
SGA | CONCOCT | 25 | ||
MaxBin2 | 5 | |||
SolidBin | 4 | |||
Sharon-All [39] | 12 | metaSPAdes | CONCOCT | 48 |
MaxBin2 | 11 | |||
SolidBin | 9 | |||
SGA | CONCOCT | 27 | ||
MaxBin2 | 8 | |||
SolidBin | 5 | |||
50G-SR | 50 | metaSPAdes | CONCOCT | 44 |
MaxBin2 | 44 | |||
SolidBin | 45 | |||
Lake Water [40] | 57 | metaSPAdes | CONCOCT | 149 |
MaxBin2 | 57 | |||
SolidBin | N/A\(^{*}\) | |||
100G-LR [37] | 100 | metaFlye | CONCOCT | 76 |
MaxBin2 | 76 | |||
SolidBin | 86 |