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Table 1 The number of bins identified by the binning tools for each dataset

From: Improving metagenomic binning results with overlapped bins using assembly graphs

Dataset Ground truth bins Assembly type Binning tool Number of bins identified
Sim-5G 5 metaSPAdes CONCOCT 7
MaxBin2 5
SolidBin 5
SGA CONCOCT 11
MaxBin2 5
SolidBin 5
Sim-10G 10 metaSPAdes CONCOCT 12
MaxBin2 10
SolidBin 10
SGA CONCOCT 14
MaxBin2 9
SolidBin 9
Sim-20G 20 metaSPAdes CONCOCT 22
MaxBin2 21
SolidBin 20
SGA CONCOCT 28
MaxBin2 20
SolidBin 19
Sharon-1 [39] 12 metaSPAdes CONCOCT 27
MaxBin2 5
SolidBin 5
SGA CONCOCT 25
MaxBin2 5
SolidBin 4
Sharon-All [39] 12 metaSPAdes CONCOCT 48
MaxBin2 11
SolidBin 9
SGA CONCOCT 27
MaxBin2 8
SolidBin 5
50G-SR 50 metaSPAdes CONCOCT 44
MaxBin2 44
SolidBin 45
Lake Water [40] 57 metaSPAdes CONCOCT 149
MaxBin2 57
SolidBin N/A\(^{*}\)
100G-LR [37] 100 metaFlye CONCOCT 76
MaxBin2 76
SolidBin 86
  1. \(^{*}\) SolidBin [22] could not be run on the Lake Water dataset due to insufficient memory