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Table 1 Impact of short-read filtering strategies on LazyB assembly quality in fruit fly

From: LazyB: fast and cheap genome assembly

Filter strategy

Compl. [%]

#ctg

#MA

no filter

82.81

457

302

k-mer filter

80.66

567

104

unitig filter

80.71

563

108

k-mer and unitig filter

80.11

596

99

  1. Column descriptions: completeness of the assembly, #ctg: number of contigs, #MA: number of mis-assemblies (breakpoints relative to the reference assembly)
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Algorithms for Molecular Biology

ISSN: 1748-7188