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Table 1 Impact of short-read filtering strategies on LazyB assembly quality in fruit fly

From: LazyB: fast and cheap genome assembly

Filter strategy Compl. [%] #ctg #MA
no filter 82.81 457 302
k-mer filter 80.66 567 104
unitig filter 80.71 563 108
k-mer and unitig filter 80.11 596 99
  1. Column descriptions: completeness of the assembly, #ctg: number of contigs, #MA: number of mis-assemblies (breakpoints relative to the reference assembly)
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Algorithms for Molecular Biology

ISSN: 1748-7188