Table 4 Assessment of assembly qualities for very low coverage of long reads at maximum short read coverage (\(\sim 43\times \)) on human
X | Tool | Compl.[%] | #ctg | #MA | MM | InDels |
|---|---|---|---|---|---|---|
1\(\times \) | LazyB | 10.329 | 38342 | 109 | 831.14 | 773.86 |
LazyB+QM | 19.023 | 39588 | 280 | 418.26 | 332.60 | |
Wtdbg2 | 0.285 | 6724 | 21 | 1477.08 | 313.01 | |
DBG2OLC | 0.771 | 9475 | 10 | 1050.82 | 202.51 | |
Wengan | 67.220 | 116201 | 4057 | 208.38 | 142.51 | |
2\(\times \) | LazyB | 25.865 | 69043 | 432 | 938.26 | 814.44 |
LazyB+QM | 35.151 | 68180 | 693 | 648.35 | 521.57 | |
Wtdbg2 | 2.069 | 24346 | 126 | 1334.25 | 384.36 | |
DBG2OLC | 3.904 | 34069 | 58 | 959.98 | 492.63 | |
Wengan | 72.915 | 90784 | 4954 | 259.42 | 195.63 | |
2.5\(\times \) | LazyB | 32.126 | 70690 | 692 | 978.28 | 825.80 |
LazyB+QM | 39.796 | 69053 | 917 | 753.19 | 606.78 | |
Wtdbg2 | 3.702 | 32031 | 163 | 1202.70 | 412.21 | |
DBG2OLC | 7.104 | 42864 | 170 | 1044.31 | 679.40 | |
Wengan | 74.835 | 80605 | 5115 | 271.25 | 211.36 | |
\({\sim} 43\times \) | ABySS | 84.180 | 510315 | 2669 | 98.53 | 25.03 |