Table 5 Assessment of running times for all tools. Resource consumptions for LazyB are shown for the complete assembly process comprising (1) ABySS unitig assembly; (2) Mapping of unitigs to long reads and (3) running LazyB itself, denoted by A+m+ LazyB, and the the last step only, denoted by LazyB
\(\times \) | Tool | Time | RAM (MB) |
|---|---|---|---|
Yeast | |||
ABySS unitig | 00:00:11:03 | 2283 | |
ABySS full | 00:00:20:01 | 2283 | |
\({\sim} 5\times \) | Mapping | 00:00:00:05 | 540 |
LazyB | 00:00:00:30 | 136 | |
A+m+ LazyB | 00:00:11:38 | 2283 | |
Canu | 00:10:23:55 | 2617 | |
Wtdbg2 | 00:00:13:08 | 698 | |
HASLR | 00:00:06:44 | 4922 | |
DBG2OL | 00:00:31:46 | 1141 | |
Wengan | 00:00:06:45 | 4400 | |
A+Wengan | 00:00:26:46 | 4400 | |
\({\sim} 11\times \) | Mapping | 00:00:00:15 | 1544 |
LazyB | 00:00:01:46 | 362 | |
A+m+ LazyB | 00:00:13:04 | 2283 | |
Canu | 00:13:44:16 | 6779 | |
Wtdbg2 | 00:00:29:28 | 1142 | |
HASLR | 00:00:08:09 | 4922 | |
DBG2OL | 00:00:51:13 | 1264 | |
Wengan | 00:00:14:29 | 4421 | |
A+Wengan | 00:00:34:30 | 4421 | |
Fruit fly | |||
ABySS untig | 00:02:32:39 | 25344 | |
ABySS full | 00:04:56:03 | 25346 | |
\({\sim} 5\times \) | Mapping | 00:00:02:43 | 6433 |
LazyB | 00:00:08:33 | 613 | |
A+m+ LazyB | 00:02:43:55 | 25344 | |
Canu | 02:13:51:39 | 7531 | |
Wtdbg2 | 00:01:37:41 | 3395 | |
HASLR | 00:01:30:33 | 5531 | |
DBG2OL | 00:07:58:22 | 6151 | |
Wengan | 00:01:41:26 | 5394 | |
A+Wengan | 00:06:10:29 | 25346 | |
\({\sim} 10\times \) | Mapping | 00:00:06:11 | 9491 |
LazyB | 00:00:11:57 | 2241 | |
A+m+ LazyB | 00:02:50:47 | 25344 | |
Canu | 07:04:08:28 | 7541 | |
Wtdbg2 | 00:04:02:43 | 5024 | |
HASLR | 00:01:43:21 | 5553 | |
DBG2OL | 02:07:32:01 | 17171 | |
Wengan | 00:02:28:51 | 5323 | |
A+Wengan | 00:07:24:54 | 25346 | |