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Fig. 6 | Algorithms for Molecular Biology

Fig. 6

From: Approximate search for known gene clusters in new genomes using PQ-trees

Fig. 6

Approximate plasmid instances of the query PQ-tree in Fig. 5A that include an insertion of the gene CusF (COG5569), as detected by PQFinder. These instances correspond to representative (3) from Fig. 5C (CusS-CusR-CusC-CusF-CusB-CusA). The instances are displayed using the graphical interface of the tool CSBFinder-S [44]. COG-to-gene mapping: COG0642:CusS, COG0745:CusR, COG1538:CusC, COG5569:CusF, COG0845:CusB, COG3969:CusA. “X” indicates a gene with no COG annotation. Note that the DNA sequence of Klebsiella pneumoniae MGH 78578 was updated by the NCBI on Oct 9, 2019, and since then the gene CusA (COG3696) is identified in the corresponding plasmid (Accession ID NC_009649). Instances of additional variants of this gene cluster query can be found in Additional file 1: Figure S1

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