Disk compression of k-mer sets

Table 4 Decompression time in seconds

Dataset	UST-Compress	ESS-Tip-Compress			ESS-Compress
Dataset	MFC-D	MFC-D	Core	Total	MFC-D	Core	Total
R. sphaeroides	3	2	1	4	2	1	3
Human RNA-seq	40	41	19	60	34	17	51
Gingiva metagenome	37	38	16	54	30	15	45
Soybean	31	33	13	46	29	13	42
Tongue metagenome	62	61	28	89	49	25	74
Whole human	302	337	259	596	303	250	553

The time is broken down into the portion taken by MFC to decompress the binary file into an enriched string set and the portion taken by our core algorithm to decompress the enriched string set into an SPSS. Note that BOSS does not implement decompression (because it is a membership data structure) so it is not included

ISSN: 1748-7188