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Table 4 Number of SNPs involved in the prediction made by each model for each drug

From: INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis

Drug INGOT-DR KOVER LR-l1 LR-l2 RF SVM-l1 SVM-l2
Isoniazid 20 20 1045 62,707 22,336 626 54,630
Rifampicin 20 20 739 63,621 29,373 476 52,732
Ethambutol 20 19 154 53,476 19,864 661 43,094
Pyrazinamide 20 17 114 32,885 9495 428 25,485
Streptomycin 20 13 5804 43,771 23,996 594 40,183
Kanamycin 20 20 2383 20,934 9314 231 18,716
Amikacin 20 19 2252 16,622 7639 212 14,260
Capreomycin 20 20 2103 14,907 7881 234 13,432
Ethionamide 20 20 41 14,791 7777 280 13,551
Ofloxacin 20 17 394 23,206 14,312 265 19,694
Moxifloxacin 12 7 29 11,678 1371 125 10,237
Ciprofloxacin 5 5 18 5448 325 29 4343
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Algorithms for Molecular Biology

ISSN: 1748-7188