Fig. 2
From: Fast characterization of segmental duplication structure in multiple genome assemblies
A decomposition of three partially overlapping SDs into a set of elementary SDs. Each SD is bounded by a solid line box. SD paralogs are linked by a by a dashed line. Each elementary SD is represented as a colored box. The boxes of core duplicons—elementary SDs shared by all SDs—are depicted with a dashed border. Note that a boundary of each elementary SD either a boundary of an existing SD or its “image”. Different boundaries are represented by different shapes, and their “images” (paralog copies) also share the same shape