Table 3 SD coverage of the human and mouse genomes (hg19 and mm8) and the runtime performance of BISER, SEDEF and SDquest
From: Fast characterization of segmental duplication structure in multiple genome assemblies
Tool | Covered (MBp) | Missed (MBp) | Extra (MBp) | Time |
|---|---|---|---|---|
hg19 | ||||
WGAC (standard) | 104.5 | days | ||
BISER | 158.0 | 0.5 | 54.0 | 7 min |
SEDEF | 149.2 | 0.1 | 44.8 | 1 h 15 min |
SDquest | 132.2 | 3.3 | 30.9 | 3 h 56 min |
mm8 | ||||
WGAC (standard) | 80.3 | days | ||
BISER | 135.1 | 1.3 | 56.0 | 11 min |
SEDEF | 145.6 | 0.2 | 65.4 | 1 h 24 min |
SDquest | 115.7 | 3.8 | 39.2 | 6 h 06 min |