Table 1 Dataset Summaries
From: Heuristic shortest hyperpaths in cell signaling hypergraphs
NCI-PID | ||||||||
|---|---|---|---|---|---|---|---|---|
Measure | Small | Medium | Large | Reactome | ||||
Vertices | 56 | 350 | 9,009 | 20,458 | ||||
Hyperedges | 36 | 228 | 8,456 | 11,802 | ||||
Pathways | 2 | 6 | 213 | 2,516 | ||||
Sources | 19 | 138 | 3,200 | 8,296 | ||||
Targets | 10 | 102 | 2,636 | 5,066 | ||||
Self-loops | 1 | 8 | 40 | 433 | ||||
Unreachable self-loops | 1 | 7 | 14 | 32 | ||||
mean | max | mean | max | mean | max | mean | max | |
|---|---|---|---|---|---|---|---|---|
Tail size | 1.8 | 3 | 1.9 | 5 | 1.9 | 10 | 2.4 | 26 |
Head size | 1.3 | 3 | 1.3 | 4 | 1.1 | 5 | 1.6 | 28 |
Forward-reachable set | 35 | 35 | 192 | 192 | 6,169 | 6,169 | 4,645 | 4,645 |
Backward-traceable set | 28 | 28 | 49 | 70 | 1,198 | 2,863 | 4,027 | 7,021 |
Doubly-reachable set | 27 | 27 | 42 | 60 | 756 | 1,836 | 929 | 1,725 |
In-degree | 0.8 | 5 | 0.8 | 15 | 1.0 | 323 | 0.9 | 1,056 |
Out-degree | 1.1 | 4 | 1.2 | 24 | 1.7 | 326 | 1.4 | 1,167 |