Table 1 List of the full names and database accession numbers of coronavirus species used in our research. Species were chosen from the dataset studied in [53]
From: Embedding gene trees into phylogenetic networks by conflict resolution algorithms
Abbreviated name | Organism name | Accession Number (GenBank/GISAID) | Host organism |
|---|---|---|---|
Hu-Wuhan | BetaCoV Wuhan-Hu-1 | \(NC_045512.2\) | Human |
Hu-Italy | hCoV-19/Italy/ ABR-IZSGC-TE4836/2020 | \(EPI_ISL_418260\) | Human |
RaTG13 | Bat CoV RaTG13 | MN996532.1 | Bat |
Guangdong-Png | hCoV-19/pangolin/ Guangdong/1/2019 | \(EPI_ISL_410721\) | Pangolin |
Guanxi-Png-P2V | Pangolin CoV isolate \(PCoV_GX-P2V\) | MT072864 | Pangolin |
Bat-CoVZC45 | Bat SARS-like CoV isolate bat-SL-CoVZC45 | MG772933.1 | Bat |
Bat-CoVZXC21 | Bat SARS-like CoV isolate bat-SL-CoVZXC21 | MG772934.1 | Bat |
Bat-CoV273 | Bat CoV BtCoV/273/2005 | DQ648856.1 | Bat |
Bat-CoV 279 | Bat CoV BtCoV/279/2005 | DQ648857.1 | Bat |
HKU3-12 | Bat SARS CoV HKU3-12 | GQ153547.1 | Bat |
Rf1 | Bat SARS CoV Rf1 | DQ412042.1 | Bat |
SARS | SARS CoV BJ01 | AY278488.2 | Human |
SARS-BJ182-4 | SARS CoV BJ182-4 | EU371562 | Human |
Rs3367 | Bat SARS-like CoV Rs3367 | KC881006.1 | Bat |
BM48-31-BGR | Bat CoV BM48-31/ BGR/2008 | GU190215.1 | Bat |