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Table 7 Statistics on scaffold graphs

From: On a greedy approach for genome scaffolding

Data

#Contigs

#Edges

\(\sigma _p\)

Completion rate [%]

Cluster

Block

Anopheles

42,045

71,452

7201

27

20

Anthrax

4055

6958

371

94

91

Ebola

17

26

4

81

70

Gloeobacter

4517

7885

506

95

95

Lactobacillus

1898

3335

185

94

89

Monarch

14

19

4

45

39

Pandora

2451

4271

291

91

83

Pseudomonas

5248

9086

543

95

87

Rice

84

26

10

76

69

Sacchr3

296

527

34

88

81

Sacchr12

889

1522

101

94

94

  1. The completion rate is the percentage of added edges compared to number of added edges in the complete version. For all instances, we take \(\sigma _c=0\)
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Algorithms for Molecular Biology

ISSN: 1748-7188