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Fig. 3 | Algorithms for Molecular Biology

Fig. 3

From: Pangenomic genotyping with the marker array

Fig. 3

Mean time over 10 trials of aligning 10,000 simulated reads from HG01498 against the augmented marker array (marker) and the r-index suffix array (locate). Experiments are repeated for marker collections including all alleles (\(AF > 0\)) and for alleles having frequency at least 1% (\(AF > 0.01\)). Left: The experiment is repeated for various window sizes w, and for 100 haplotypes. Right: The experiment is repeated for different numbers of indexed haplotypes, with \(w=19\)

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Algorithms for Molecular Biology

ISSN: 1748-7188